Slides
The PDF version of the slides used during the course can be found in the slides folder in the repository.
Here is a summary of available slide decks:
| Day | Topic | Slide Deck |
|---|---|---|
| 1 | Welcome and course intro | Slides PDF |
| 1 | Nextflow – why is important for you? | Slides PDF |
| 1 | Nextflow run introduction | Slides PDF |
| 1 | Hello Nextflow – introduction to the code | Slides PDF |
| 1 | Nextflow channels | Slides PDF |
| 1 | More on channels | Slides PDF |
| 1 | Channels operators | Slides PDF |
| 2 | Make your data flow in a workflow | Slides PDF |
| 2 | Modules and subworkflows | Slides PDF |
| 2 | Introduction to containers | Slides PDF |
| 2 | Use containers in Nextflow | Slides PDF |
| 2 | Basic configuration and process directives | Slides PDF |
| 3 | Advanced configuration | Slides PDF |
| 3 | Advanced publish of files | Slides PDF |
| 3 | Best practices for pipeline structure | Slides PDF |
| 3 | Advanced scripting in nextflow process | Only practicals |
| 3 | Reporting and monitoring | Slides PDF |
| 4 | nf-core introduction | Only practicals |
| 4 | nf-core basic tools | Only practicals |