Monitoring with Tower

To easily monitor pipeline execution, we suggest to use Nextflow Tower.

1. First, register to the Nextflow tower using your GitHub or Google account.
2. Then, click on your profile (upper right corner) and select Your tokens. Then click add token and follow the instructions to create a new token. Make sure to copy the generated token, since you were not able to see it again.
3. Add the following to single_project.conf file or create a separate tower.conf file and then run the pipeline adding -c tower.conf:

tower {
  enabled = true
  accessToken = 'your_token_here'
}

Now when the pipeline is running you should be able to monitor progress in the Nextflow tower under your runs.